Interactomics Publication

From Interactomics

1. Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map).
   Daeui Park, Semin Lee, Dan Bolser, Michael Schroeder, Michael Lappe, Donghoon Oh and Jong Bhak Bioinformatics. 2005 May 24.  Comparative interactomics abstract
   - Supplementary table 1 - 1
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   - Supplementary table 1 - 3
   - Supplementary table 1 - 4
   - Supplementary table 3
2. PSIbase: a database of Protein Structural Interactome map (PSIMAP). (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15749693) Gong S, Yoon G, Jang I, Bolser D, Dafas P, Schroeder M, Choi H, Cho Y, Han K, Lee S, Choi H, Lappe M, Holm L, Kim S, Oh D, Bhak J. Bioinformatics. 2005 Mar 3
3. Architecture of basic building blocks in protein and domain structural interaction networks (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15613386). Moon HS, Bhak J, Lee KH, Lee D.Bioinformatics. 2005 Apr 15;21(8):1479-86. Epub 2004 Dec 21.
4. Using convex hulls to extract interaction interfaces from known structures. (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15231539) Panos Dafas, Dan Bolser, Jacek Gomoluch, Jong Park and Michael Schroeder, Bioinformatics. 10 July 2004. 20(10):1486-1490.
5. HPID: The Human Protein Interaction Database. (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15117749) Kyungsook Han, Byungkyu Park, Hyongguen Kim, Jinsun Hong and Jong Park, Bioinformatics, 29 Apr. 2004 (In press)
6. Large scale co-evolution analysis of Protein Structural Interlogues using the global Protein Structural Interactome Map(PSIMAP). (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14764552) Wankyu Kim, Dan M. Bolser and Jong Park, Bioinformatics, 2004, 20(7):1138-1150.
7. Visualisation and Graph-theoretic Analysis of a Large-scale Protein Structural Interactome. (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14531933) Dan M Bolser, Panos Dafas, Richard Harrington, Jong Park and Michael Schroeder, BMC Bioinformatics, 8 October 2003, 4;45:1471-2105.
8. Visualization and Analysis of Protein Interactions. (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12538268) Byonghyon Ju, ByungkyuPark, Jong Park and Kyungsook Han, Bioinformatics, 2003, 19:317-318.
9. Predicting Protein Interactions in Human by Homologous Interactions in Yeast. Hyongguen Kim, Jong Park and Kyungsook Han, Lecture Notes in Computer Science, 2003, 2637:159-165.
10. Network Biology (http://networkbiology.net): Datamining Biological Networks. IEEE Intelligent Systems (http://csdl.computer.org/comp/mags/ex/2002/03/x3toc.htm), May/June (Vol. 17, No. 3, pp66-80). 2002
11. The Conservation of Protein Interaction Network in Evolution. (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=11791232&dopt=Abstract) GIW2001 (http://www.jsbi.org/journal/GIW01/GIW01F14.html): The Twelfth International Conference on Genome Informatics, Tokyo Japan, 2001.
12. Generating protein interactioin map from incomplete data: application of fold assignment. (http://bio.cc/PSIMAP/Paper/PSIMAP_bioinformatics_2001.html) Lappe M, Park J, Niggemann O, Holm L. Bioinformatics. 2001;17 Suppl 1:S149-56. PMID: 11473004 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=11473004&dopt=Abstract) [PubMed - indexed for MEDLINE]. PDF file (http://bio.cc/PSIMAP/Paper/bioinformatics_paper_for_fold_assignment_2001.pdf) dezmembrari auto
13. Mapping Protein Family Interactions: Intramolecular and Intermolecular Protein Family Interaction Repertoires in the PDB and Yeast , Jong Park, Michael Lappe & Sarah A. Teichmann, Journal of Molecular Biology (2001). PDF file (http://bio.cc/Publish/Paper/JMB_published_PSIMAP.pdf)
14. Pinakpani Chakrabarti lab publication